Installing delft3d on Turbine

1.  Check prerequisites exist
			- gFortran   (GNU compiler)
			- g++         (C++ compiler)
			- mpich2
			- NetCDF 3.4
			
2    Use script build_new.sh to build delft3d executables and libraries
        ./build_new.sh			
        
     Note:  This is a modified version of build.sh, with some settings modified for the local environment on Turbine.  
     All modifications have been labelled with the string 'JMW'.
   
     Summary of changes:
        a) directories to mpich2 redefined
        b) directories to Libtools, etc removed - already on path
        c) Fortran compiler option -fno-align-commons added to FCFLAGS.  This forces common variables to fall on byte boundaries.
        d) NETCDF include path added to fortran compiler options, via fflags variable (** not needed if option e is included)
        e) NETCDF_MODULES environment paramater defined to point to the include directory under the NETCDF root direction
     
     
3.   Other modifications made:
			 a) In  ./src/utils_lgpl/ec_module/packages/ec_module/src/Makefile.am  
			        
			  #Includes
           FMODULES += \
	           -I$(top_builddir)/utils_lgpl/deltares_common/packages/deltares_common/src 
            
        Modfiied as follows to include the directory containing the netcdf module file, netcdf.mod, i.e.:    
           
        #Includes
           FMODULES += \
	           -I$(top_builddir)/utils_lgpl/deltares_common/packages/deltares_common/src \
             -I$(NETCDF_MODULES) 
             
       b) In  /home/walshjm/delft3d/SourceCode/turbine/src/utils_lgpl/ec_module/packages/ec_module/src/
       
             Code changes were made in
               ec_support.f90
               ec_bcreader.f90
               ec_instance.f90
               ec_provider.f90
             
             Change char(len=:), allocatable -> non allocatable character arrays (since the former will not compile under gFortran
             
             Changes are commented with JMW tag
             
        c}    /home/walshjm/delft3d/SourceCode/turbine/src/engines_gpl/part/packages/delpar/src/main.f
        
              Source code change in main.f:  'stop(1)' changed to 'stop'    (3x)    
             
              
               
               
               
Installing NetCDF

       In the NetCDF source directory execute the following commands
            ./configure  --prefix=/outdir             where outdir is a path to the output director e.g. /home/walshjm/netcdf
            make check
            make install